PINK-annotation-schema

Tools

Generating keywords file for Tripper

To generate the keywords file for [Tripper], run the file scripts/generate_tripper_keywords.py.

This requires that [Tripper] is installed in your python environment.

A few considerations when running the script: First and foremost, when the keywords are generated from the ontology the argument redefine is set to allow. This means that terms already defined in Tripper’s default keywords will be overwritten if they match prefLabels in the PINK Annotation schema. In addition, when turning on logging a few extra notifications are printed.